Parameter Tuning for the NFFT Based Fast Ewald Summation

نویسنده

  • Franziska Nestler
چکیده

The computation of the Coulomb potentials and forces in charged particle systems under 3d-periodic boundary conditions is possible in an efficient way by utilizing the Ewald summation formulas and applying the fast Fourier transform (FFT). In this paper we consider the particle-particle NFFT (P2NFFT) approach, which is based on the fast Fourier transform for nonequispaced data (NFFT) and compare the error behaviors regarding different window functions, which are used in order to approximate the given continuous charge distribution by a mesh based charge density. Typically B-splines are applied in the scope of particle mesh methods, as for instance within the well-known particle-particle particle-mesh (P3M) algorithm. The publicly available P2NFFT algorithm allows the application of an oversampled FFT as well as the usage of different window functions. We consider for the first time also an approximation by Bessel functions and show how the resulting root mean square errors in the forces can be predicted precisely and efficiently. The results show that, if the parameters are tuned appropriately, the Bessel window function is in many cases even the better choice in terms of computational costs. Moreover, the results indicate that it is often advantageous in terms of efficiency to spend some oversampling within the NFFTwhile using a window function with a smaller support.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

2d-periodic Ewald Summation

In this paper we develop new fast Fourier-based methods for the Coulomb problem. We combine the Ewald summation formulas and the fast summation approach based on the nonequispaced fast Fourier transform (NFFT) in order to develop efficient methods for calculating the Coulomb energies as well as the acting forces in charged particle systems subject to mixed periodic boundary conditions. Therewit...

متن کامل

Fast Ewald summation under 2d- and 1d-periodic boundary conditions based on NFFTs

Ewald summation has established as basic element of fast algorithms evaluating the Coulomb interaction energy of charged particle systems in three dimensions subject to periodic boundary conditions. In this context particle mesh routines, as the P3M method, and the P2NFFT, which is based on nonequispaced fast Fourier transforms (NFFT), should be mentioned. These methods treat the problem effici...

متن کامل

MMM2D: A fast and accurate summation method for electrostatic interactions in 2D slab geometries

We present a new method, in the following called MMM2D, to accurately calculate the electrostatic energy and forces on charges being distributed in a two dimensional periodic array of finite thickness. It is not based on an Ewald summation method and as such does not require any fine-tuning of an Ewald parameter for convergence. We transform the Coulomb sum via a convergence factor into a serie...

متن کامل

Damped reaction field method and the accelerated convergence of the real space Ewald summation.

In this paper, we study a general theoretical framework which allows us to approximate the real space Ewald sum by means of effective force shifted screened potentials, together with a self term. Using this strategy it is possible to generalize the reaction field method, as a means to approximate the real space Ewald sum. We show that this method exhibits faster convergence of the Coulomb energ...

متن کامل

Ewald summation techniques in perspective: a survey

The simulation of large macromolecular systems has been and remains a challenging problem. There is a general presumption that simulations carried in periodic boundary conditions (PBC) are often the most appropriate to suppress boundary effects. To this end, Ewald summation has been employed to handle long ranged interactions in PBC. There has been a great deal of research targeted at improving...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2016